Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2020090..2020235 | Replicon | chromosome |
| Accession | NZ_CP083007 | ||
| Organism | Klebsiella pneumoniae strain 6711.43 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2020126..2020228 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2020090..2020235 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9F29_RS09895 (K9F29_09905) | 2015220..2017280 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| K9F29_RS09900 (K9F29_09910) | 2017284..2017943 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K9F29_RS09905 (K9F29_09915) | 2018022..2018252 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K9F29_RS09910 (K9F29_09920) | 2018365..2018739 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K9F29_RS09915 (K9F29_09925) | 2018743..2019612 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K9F29_RS09920 (K9F29_09930) | 2019629..2019967 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2020090..2020235 | - | 146 | - | - | Antitoxin |
| - | 2020126..2020228 | + | 103 | - | - | Toxin |
| K9F29_RS09925 (K9F29_09935) | 2020603..2020746 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K9F29_RS09930 (K9F29_09940) | 2020851..2021819 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K9F29_RS09935 (K9F29_09945) | 2021976..2022629 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| K9F29_RS09940 (K9F29_09950) | 2022626..2022817 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K9F29_RS09945 (K9F29_09955) | 2022915..2023154 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K9F29_RS09950 (K9F29_09960) | 2023270..2024703 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215858 NZ_CP083007:2020126-2020228 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT215858 NZ_CP083007:c2020235-2020090 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
