Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1947883..1948028 | Replicon | chromosome |
| Accession | NZ_CP082995 | ||
| Organism | Klebsiella pneumoniae strain 6911.28 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1947919..1948021 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1947883..1948028 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9F31_RS09580 (K9F31_09575) | 1943013..1945073 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K9F31_RS09585 (K9F31_09580) | 1945077..1945736 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K9F31_RS09590 (K9F31_09585) | 1945815..1946045 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K9F31_RS09595 (K9F31_09590) | 1946158..1946532 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K9F31_RS09600 (K9F31_09595) | 1946536..1947405 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| K9F31_RS09605 (K9F31_09600) | 1947422..1947760 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1947883..1948028 | - | 146 | - | - | Antitoxin |
| - | 1947919..1948021 | + | 103 | - | - | Toxin |
| K9F31_RS09610 (K9F31_09605) | 1948397..1948540 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K9F31_RS09615 (K9F31_09610) | 1948645..1949613 | - | 969 | WP_073971755.1 | VirK/YbjX family protein | - |
| K9F31_RS09620 (K9F31_09615) | 1949770..1950423 | + | 654 | WP_032441330.1 | protein-serine/threonine phosphatase | - |
| K9F31_RS09625 (K9F31_09620) | 1950420..1950611 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K9F31_RS09630 (K9F31_09625) | 1950709..1950948 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K9F31_RS09635 (K9F31_09630) | 1951064..1952497 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215820 NZ_CP082995:1947919-1948021 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT215820 NZ_CP082995:c1948028-1947883 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
