Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2016831..2016976 | Replicon | chromosome |
| Accession | NZ_CP082988 | ||
| Organism | Klebsiella pneumoniae strain 7008.20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2016867..2016969 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2016831..2016976 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9F32_RS09760 | 2011961..2014021 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K9F32_RS09765 | 2014025..2014684 | - | 660 | WP_038431281.1 | exodeoxyribonuclease X | - |
| K9F32_RS09770 | 2014763..2014993 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K9F32_RS09775 | 2015106..2015480 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| K9F32_RS09780 | 2015484..2016353 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| K9F32_RS09785 | 2016370..2016708 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2016831..2016976 | - | 146 | - | - | Antitoxin |
| - | 2016867..2016969 | + | 103 | - | - | Toxin |
| K9F32_RS09790 | 2017345..2017488 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| K9F32_RS09795 | 2017593..2018561 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| K9F32_RS09800 | 2018718..2019371 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| K9F32_RS09805 | 2019368..2019559 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K9F32_RS09810 | 2019657..2019896 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K9F32_RS09815 | 2020012..2021445 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215799 NZ_CP082988:2016867-2016969 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT215799 NZ_CP082988:c2016976-2016831 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
