Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1898054..1898199 | Replicon | chromosome |
| Accession | NZ_CP082985 | ||
| Organism | Klebsiella pneumoniae strain 7011.62 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1898090..1898192 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1898054..1898199 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9F33_RS09120 | 1893184..1895244 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K9F33_RS09125 | 1895248..1895907 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K9F33_RS09130 | 1895986..1896216 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K9F33_RS09135 | 1896329..1896703 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K9F33_RS09140 | 1896707..1897576 | + | 870 | WP_032420215.1 | copper homeostasis membrane protein CopD | - |
| K9F33_RS09145 | 1897593..1897931 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1898054..1898199 | - | 146 | - | - | Antitoxin |
| - | 1898090..1898192 | + | 103 | - | - | Toxin |
| K9F33_RS09150 | 1898566..1898709 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K9F33_RS09155 | 1898814..1899782 | - | 969 | WP_164546347.1 | VirK/YbjX family protein | - |
| K9F33_RS09160 | 1899939..1900592 | + | 654 | WP_032444871.1 | protein-serine/threonine phosphatase | - |
| K9F33_RS09165 | 1900589..1900780 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K9F33_RS09170 | 1900878..1901117 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K9F33_RS09175 | 1901233..1902666 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215777 NZ_CP082985:1898090-1898192 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT215777 NZ_CP082985:c1898199-1898054 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
