Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1898967..1899112 | Replicon | chromosome |
| Accession | NZ_CP082975 | ||
| Organism | Klebsiella pneumoniae strain BD-14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1899003..1899105 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1898967..1899112 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9F22_RS09125 | 1894097..1896157 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K9F22_RS09130 | 1896161..1896820 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K9F22_RS09135 | 1896899..1897129 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K9F22_RS09140 | 1897242..1897616 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K9F22_RS09145 | 1897620..1898489 | + | 870 | WP_032420215.1 | copper homeostasis membrane protein CopD | - |
| K9F22_RS09150 | 1898506..1898844 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1898967..1899112 | - | 146 | - | - | Antitoxin |
| - | 1899003..1899105 | + | 103 | - | - | Toxin |
| K9F22_RS09155 | 1899479..1899622 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K9F22_RS09160 | 1899727..1900695 | - | 969 | WP_164546347.1 | VirK/YbjX family protein | - |
| K9F22_RS09165 | 1900852..1901505 | + | 654 | WP_032444871.1 | protein-serine/threonine phosphatase | - |
| K9F22_RS09170 | 1901502..1901693 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K9F22_RS09175 | 1901791..1902030 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K9F22_RS09180 | 1902146..1903579 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215739 NZ_CP082975:1899003-1899105 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT215739 NZ_CP082975:c1899112-1898967 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
