Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicA-HicB |
| Location | 1714130..1714809 | Replicon | chromosome |
| Accession | NZ_CP082952 | ||
| Organism | Acinetobacter baumannii strain Cl300 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | S3TWT7 |
| Locus tag | K9C16_RS08200 | Protein ID | WP_000838146.1 |
| Coordinates | 1714130..1714312 (+) | Length | 61 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | N9L2H6 |
| Locus tag | K9C16_RS08205 | Protein ID | WP_000966688.1 |
| Coordinates | 1714405..1714809 (+) | Length | 135 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9C16_RS08165 (K9C16_08150) | 1709428..1709796 | + | 369 | WP_025468552.1 | hypothetical protein | - |
| K9C16_RS08170 (K9C16_08155) | 1709798..1710196 | + | 399 | WP_057078255.1 | phage tail terminator-like protein | - |
| K9C16_RS08175 (K9C16_08160) | 1710198..1710425 | + | 228 | WP_057078256.1 | hypothetical protein | - |
| K9C16_RS08180 (K9C16_08165) | 1710540..1710893 | + | 354 | WP_057078257.1 | hypothetical protein | - |
| K9C16_RS08185 (K9C16_08170) | 1710893..1712248 | + | 1356 | WP_000002416.1 | hypothetical protein | - |
| K9C16_RS08190 (K9C16_08175) | 1712301..1713218 | + | 918 | WP_000094253.1 | phage tail tube protein | - |
| K9C16_RS08195 (K9C16_08180) | 1713289..1713804 | + | 516 | WP_024616020.1 | hypothetical protein | - |
| K9C16_RS08200 (K9C16_08185) | 1714130..1714312 | + | 183 | WP_000838146.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| K9C16_RS08205 (K9C16_08190) | 1714405..1714809 | + | 405 | WP_000966688.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| K9C16_RS08210 (K9C16_08195) | 1714908..1715588 | + | 681 | WP_000721572.1 | hypothetical protein | - |
| K9C16_RS08215 (K9C16_08200) | 1715590..1715853 | + | 264 | WP_001275792.1 | hypothetical protein | - |
| K9C16_RS08220 (K9C16_08205) | 1715981..1718626 | + | 2646 | Protein_1597 | tape measure protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | csuA/B / csuA / csuB / csuC / csuD / csuE / pgaB / pgaC / pgaD / plc | 1430771..1835959 | 405188 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 61 a.a. Molecular weight: 6695.84 Da Isoelectric Point: 10.5523
>T215684 WP_000838146.1 NZ_CP082952:1714130-1714312 [Acinetobacter baumannii]
VKSLDLIKMIEADGWYEVRVSGSHHHFKHPTKKGLVTIPHPKKDLPNGTVKSILKQAGLN
VKSLDLIKMIEADGWYEVRVSGSHHHFKHPTKKGLVTIPHPKKDLPNGTVKSILKQAGLN
Download Length: 183 bp
>T215684 NZ_CP110889:c438852-438388 [Thermoclostridium stercorarium]
TTGCTTTATGAATTTCTTCTCATCAAGGCCGACAACGAAGGTATAAATGTATATGAAAAGGAAATCGGGAAATTAAAAGG
ATTATACTTTGACGGAAATATAATAATTAATTCTTCAATCGAAACAAATTCTGAAAAAGCCTGTATTTTAGCCGAAGAAT
TGGGACATCATTATACGACCCATGGAAATATATTGAACCAATGTAAAGTAGAAAACAGAAAACAAGAGCGTAGAGCCCGC
GCCTGGGCATACGAACGACTGGTAAGTTTGAATAGCCTGATAGAGGCATCTAAACATGGTATCAGAAATAGATTTGAGTT
AGCTGAATTTTTGGGTGTATCCGAACGTTTTATTGATGAGGCAATTCAATATTACAAAGAAAAGTATGGTATTTGCCACA
AAGTTAGAGATTACATAGTTTATTTTGAACCTTTAGGAGTTCTAAAAAAAGTACAAAAGGAGTGA
TTGCTTTATGAATTTCTTCTCATCAAGGCCGACAACGAAGGTATAAATGTATATGAAAAGGAAATCGGGAAATTAAAAGG
ATTATACTTTGACGGAAATATAATAATTAATTCTTCAATCGAAACAAATTCTGAAAAAGCCTGTATTTTAGCCGAAGAAT
TGGGACATCATTATACGACCCATGGAAATATATTGAACCAATGTAAAGTAGAAAACAGAAAACAAGAGCGTAGAGCCCGC
GCCTGGGCATACGAACGACTGGTAAGTTTGAATAGCCTGATAGAGGCATCTAAACATGGTATCAGAAATAGATTTGAGTT
AGCTGAATTTTTGGGTGTATCCGAACGTTTTATTGATGAGGCAATTCAATATTACAAAGAAAAGTATGGTATTTGCCACA
AAGTTAGAGATTACATAGTTTATTTTGAACCTTTAGGAGTTCTAAAAAAAGTACAAAAGGAGTGA
Antitoxin
Download Length: 135 a.a. Molecular weight: 14647.69 Da Isoelectric Point: 4.4328
>AT215684 WP_000966688.1 NZ_CP082952:1714405-1714809 [Acinetobacter baumannii]
MLYPIAIERGSDTEAFGVTVPDIPGCFSAGDTLEEAIENVKEAISGHLEILAEDGEEIPLASELVKFVDDPEYKGMIWAV
TEVDVSRYLGKPEKINVTLPSRLIRKIDENVGKGKRYTTRSAFLAAGAEKLLHA
MLYPIAIERGSDTEAFGVTVPDIPGCFSAGDTLEEAIENVKEAISGHLEILAEDGEEIPLASELVKFVDDPEYKGMIWAV
TEVDVSRYLGKPEKINVTLPSRLIRKIDENVGKGKRYTTRSAFLAAGAEKLLHA
Download Length: 405 bp
>AT215684 NZ_CP110889:c439215-438874 [Thermoclostridium stercorarium]
TTGGCTATTGGTGATAGAATAAAAAAACTAAGAATGGAAAAAGGCATGACGCAGGAAGAATTGGCTAAATATATTGATTC
CACCAAACAAACAATTTATAAATATGAAAATAATATTGTGACTAATATTCCCTCTGATAAGATTGAAAAAATTGCAGAGG
CATTAGGAACGACACCTTCTTATTTAATGGGCTGGAACGATACAGCTTCCAAAAATAATGTTAAAAAGCCCATCACTGTT
GCCGCACATATTCCTGATGGCGTTGAACTTACTGAGGAAGATATAAAACAAATCAATGACTTCATACAGTTCATTATTTC
AAAAAAGAAGGATCAAAAGTAA
TTGGCTATTGGTGATAGAATAAAAAAACTAAGAATGGAAAAAGGCATGACGCAGGAAGAATTGGCTAAATATATTGATTC
CACCAAACAAACAATTTATAAATATGAAAATAATATTGTGACTAATATTCCCTCTGATAAGATTGAAAAAATTGCAGAGG
CATTAGGAACGACACCTTCTTATTTAATGGGCTGGAACGATACAGCTTCCAAAAATAATGTTAAAAAGCCCATCACTGTT
GCCGCACATATTCCTGATGGCGTTGAACTTACTGAGGAAGATATAAAACAAATCAATGACTTCATACAGTTCATTATTTC
AAAAAAGAAGGATCAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|