Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 689715..689860 | Replicon | chromosome |
| Accession | NZ_CP082936 | ||
| Organism | Klebsiella pneumoniae strain NDM-71 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 689751..689853 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 689715..689860 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8M01_RS03125 | 684845..686905 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K8M01_RS03130 | 686909..687568 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| K8M01_RS03135 | 687647..687877 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K8M01_RS03140 | 687990..688364 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K8M01_RS03145 | 688368..689237 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| K8M01_RS03150 | 689254..689592 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 689715..689860 | - | 146 | - | - | Antitoxin |
| - | 689751..689853 | + | 103 | - | - | Toxin |
| K8M01_RS03155 | 690228..690371 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K8M01_RS03160 | 690476..691444 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K8M01_RS03165 | 691601..692254 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| K8M01_RS03170 | 692251..692442 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K8M01_RS03175 | 692540..692779 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K8M01_RS03180 | 692895..694328 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215656 NZ_CP082936:689751-689853 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT215656 NZ_CP082936:c689860-689715 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
