Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 278624..278769 | Replicon | chromosome |
| Accession | NZ_CP082916 | ||
| Organism | Salmonella enterica subsp. enterica serovar Newlands strain ZC-S1 3rd | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 278626..278729 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 278624..278769 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8862_RS01505 | 273824..274042 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| K8862_RS01510 | 274344..274442 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| K8862_RS01515 | 274761..276740 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| K8862_RS01520 | 277154..277432 | + | 279 | WP_001575998.1 | excisionase | - |
| K8862_RS01525 | 277407..278486 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 278624..278769 | + | 146 | - | - | Antitoxin |
| - | 278626..278729 | - | 104 | - | - | Toxin |
| K8862_RS01530 | 278869..279222 | - | 354 | WP_000722370.1 | YebY family protein | - |
| K8862_RS01535 | 279239..280114 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| K8862_RS01540 | 280115..280489 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K8862_RS01545 | 280627..280857 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K8862_RS01550 | 280965..281621 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| K8862_RS01555 | 281645..282343 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 237651..284431 | 46780 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T215556 NZ_CP082916:c278729-278626 [Salmonella enterica subsp. enterica serovar Newlands]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT215556 NZ_CP082916:278624-278769 [Salmonella enterica subsp. enterica serovar Newlands]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
