Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2455789..2455898 | Replicon | chromosome |
| Accession | NZ_CP082904 | ||
| Organism | Mixta hanseatica isolate X22927 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2455797..2455898 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2455789..2455898 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6958_RS11820 (K6958_11825) | 2451667..2451957 | - | 291 | WP_249891291.1 | hypothetical protein | - |
| K6958_RS11825 (K6958_11830) | 2452250..2452687 | - | 438 | WP_249894671.1 | lysis protein | - |
| K6958_RS11830 (K6958_11835) | 2452673..2452789 | + | 117 | Protein_2317 | GPO family capsid scaffolding protein | - |
| K6958_RS11835 (K6958_11840) | 2452801..2453004 | + | 204 | WP_249891292.1 | tail fiber assembly protein | - |
| K6958_RS11840 (K6958_11845) | 2453110..2453550 | - | 441 | WP_249891293.1 | hypothetical protein | - |
| K6958_RS11845 (K6958_11850) | 2453914..2454234 | - | 321 | WP_249891294.1 | DUF1493 family protein | - |
| K6958_RS11850 (K6958_11855) | 2454246..2454680 | - | 435 | WP_249891295.1 | hypothetical protein | - |
| K6958_RS11855 (K6958_11860) | 2454908..2455258 | + | 351 | WP_249891296.1 | DUF2778 domain-containing protein | - |
| K6958_RS11860 (K6958_11865) | 2455255..2455467 | + | 213 | WP_249891297.1 | hypothetical protein | - |
| - | 2455789..2455898 | + | 110 | - | - | Antitoxin |
| - | 2455797..2455898 | - | 102 | - | - | Toxin |
| K6958_RS11865 (K6958_11870) | 2456064..2456405 | - | 342 | WP_249891298.1 | YebY family protein | - |
| K6958_RS11870 (K6958_11875) | 2456431..2457306 | - | 876 | WP_249891299.1 | copper homeostasis membrane protein CopD | - |
| K6958_RS11875 (K6958_11880) | 2457309..2457686 | - | 378 | WP_249891300.1 | CopC domain-containing protein YobA | - |
| K6958_RS11880 (K6958_11885) | 2457815..2458042 | + | 228 | WP_249891301.1 | DNA polymerase III subunit theta | - |
| K6958_RS11885 (K6958_11890) | 2458070..2458735 | + | 666 | WP_249891302.1 | exodeoxyribonuclease X | - |
| K6958_RS11890 (K6958_11895) | 2458732..2460795 | - | 2064 | WP_249891303.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2450477..2489891 | 39414 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T215517 NZ_CP082904:c2455898-2455797 [Mixta hanseatica]
GGCAAGGCGACATCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTTACAAGAGCCATTTCCCTGGACCGAATATAG
GAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACATCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTTACAAGAGCCATTTCCCTGGACCGAATATAG
GAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 110 bp
>AT215517 NZ_CP082904:2455789-2455898 [Mixta hanseatica]
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGTAAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCGATGTCGCCTTGCC
AACAAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGTAAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCGATGTCGCCTTGCC
