Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1922943..1923095 | Replicon | chromosome |
| Accession | NZ_CP082860 | ||
| Organism | Enterobacter ludwigii strain FDAARGOS_1475 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1922978..1923081 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1922943..1923095 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8P07_RS09220 (K8P07_09190) | 1919427..1920089 | - | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
| K8P07_RS09225 (K8P07_09195) | 1920114..1920764 | - | 651 | WP_063858490.1 | carbon-nitrogen hydrolase family protein | - |
| K8P07_RS09230 (K8P07_09200) | 1920874..1921104 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| K8P07_RS09235 (K8P07_09205) | 1921242..1921613 | + | 372 | WP_063858489.1 | CopC domain-containing protein YobA | - |
| K8P07_RS09240 (K8P07_09210) | 1921615..1922484 | + | 870 | WP_223399056.1 | copper homeostasis membrane protein CopD | - |
| K8P07_RS09245 (K8P07_09215) | 1922501..1922839 | + | 339 | WP_014170622.1 | YebY family protein | - |
| - | 1922943..1923095 | - | 153 | - | - | Antitoxin |
| - | 1922978..1923081 | + | 104 | - | - | Toxin |
| K8P07_RS09250 (K8P07_09220) | 1923246..1924187 | - | 942 | WP_047356858.1 | VirK/YbjX family protein | - |
| K8P07_RS09255 (K8P07_09225) | 1924355..1924999 | + | 645 | WP_068794734.1 | protein-serine/threonine phosphatase | - |
| K8P07_RS09260 (K8P07_09230) | 1925034..1925273 | - | 240 | WP_020883412.1 | YebV family protein | - |
| K8P07_RS09265 (K8P07_09235) | 1925379..1926821 | - | 1443 | WP_108648156.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T215473 NZ_CP082860:1922978-1923081 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT215473 NZ_CP082860:c1923095-1922943 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
