Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4146107..4146251 | Replicon | chromosome |
| Accession | NZ_CP082841 | ||
| Organism | Kluyvera sp. CRP | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4146113..4146215 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4146107..4146251 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K7B04_RS19615 (K7B04_19565) | 4142388..4142627 | + | 240 | WP_163447991.1 | YebV family protein | - |
| K7B04_RS19620 (K7B04_19570) | 4142659..4143594 | - | 936 | WP_223804199.1 | kdo(2)-lipid IV(A) palmitoleoyltransferase | - |
| K7B04_RS19625 (K7B04_19575) | 4144150..4144362 | + | 213 | WP_167575581.1 | KTSC domain-containing protein | - |
| K7B04_RS19630 (K7B04_19580) | 4144466..4144876 | - | 411 | WP_223802820.1 | hydroxyisourate hydrolase | - |
| K7B04_RS19635 | 4145002..4145184 | - | 183 | WP_167575579.1 | cold-shock protein | - |
| K7B04_RS19640 (K7B04_19585) | 4145665..4145877 | + | 213 | WP_223802821.1 | cold shock-like protein CspF | - |
| - | 4146107..4146251 | + | 145 | - | - | Antitoxin |
| - | 4146113..4146215 | - | 103 | - | - | Toxin |
| K7B04_RS19645 (K7B04_19590) | 4146372..4146710 | - | 339 | WP_163448017.1 | YebY family protein | - |
| K7B04_RS19650 (K7B04_19595) | 4146723..4147592 | - | 870 | WP_223802822.1 | copper homeostasis membrane protein CopD | - |
| K7B04_RS19655 (K7B04_19600) | 4147595..4147969 | - | 375 | WP_167575576.1 | CopC domain-containing protein YobA | - |
| K7B04_RS19660 (K7B04_19605) | 4148107..4148337 | + | 231 | WP_064544733.1 | DNA polymerase III subunit theta | - |
| K7B04_RS19665 (K7B04_19610) | 4148426..4149094 | + | 669 | WP_167575575.1 | carbon-nitrogen hydrolase family protein | - |
| K7B04_RS19670 (K7B04_19615) | 4149117..4149776 | + | 660 | WP_163447983.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215428 NZ_CP082841:c4146215-4146113 [Kluyvera sp. CRP]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT215428 NZ_CP082841:4146107-4146251 [Kluyvera sp. CRP]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCTTTATAAGAATAGATGACCGTGACAGCTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCTTTATAAGAATAGATGACCGTGACAGCTTTTCCAGT
