Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2447986..2448257 | Replicon | chromosome |
| Accession | NZ_CP082835 | ||
| Organism | Escherichia coli strain 1613 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2448024..2448127 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2447986..2448257 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8O78_RS12205 | 2445143..2446582 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K8O78_RS12210 | 2446700..2446936 | + | 237 | WP_001295499.1 | YebV family protein | - |
| K8O78_RS12215 | 2447041..2447232 | + | 192 | WP_001296140.1 | YebW family protein | - |
| K8O78_RS12220 | 2447233..2447889 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2447986..2448257 | + | 272 | - | - | Antitoxin |
| - | 2448024..2448127 | - | 104 | - | - | Toxin |
| K8O78_RS12225 | 2448285..2448626 | - | 342 | WP_000976483.1 | YebY family protein | - |
| K8O78_RS12230 | 2448639..2449511 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| K8O78_RS12235 | 2449515..2449889 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| K8O78_RS12240 | 2450028..2450258 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K8O78_RS12245 | 2450360..2451016 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K8O78_RS12250 | 2451040..2451702 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T215376 NZ_CP082835:c2448127-2448024 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT215376 NZ_CP082835:2447986-2448257 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
