Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3597261..3597405 | Replicon | chromosome |
| Accession | NZ_CP082833 | ||
| Organism | Citrobacter rodentium NBRC 105723 = DSM 16636 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3597296..3597399 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3597261..3597405 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K7R23_RS17040 (K7R23_16900) | 3593718..3594380 | - | 663 | WP_012906119.1 | exodeoxyribonuclease X | - |
| K7R23_RS17045 (K7R23_16905) | 3594403..3595059 | - | 657 | WP_024132707.1 | carbon-nitrogen hydrolase family protein | - |
| K7R23_RS17050 (K7R23_16910) | 3595168..3595398 | - | 231 | WP_024132706.1 | DNA polymerase III subunit theta | - |
| K7R23_RS17055 (K7R23_16915) | 3595535..3595909 | + | 375 | WP_012906116.1 | CopC domain-containing protein YobA | - |
| K7R23_RS17060 (K7R23_16920) | 3595912..3596784 | + | 873 | WP_012906115.1 | copper homeostasis membrane protein CopD | - |
| K7R23_RS17065 (K7R23_16925) | 3596801..3597139 | + | 339 | WP_012906114.1 | YebY family protein | - |
| - | 3597261..3597405 | - | 145 | - | - | Antitoxin |
| - | 3597296..3597399 | + | 104 | - | - | Toxin |
| K7R23_RS17070 (K7R23_16930) | 3597607..3597798 | - | 192 | WP_012906113.1 | YebW family protein | - |
| K7R23_RS17075 (K7R23_16935) | 3597901..3598137 | - | 237 | WP_024132705.1 | YebV family protein | - |
| K7R23_RS17080 (K7R23_16940) | 3598252..3599691 | - | 1440 | WP_012906111.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K7R23_RS17085 (K7R23_16945) | 3599770..3602403 | - | 2634 | WP_012906110.1 | PqiB family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T215348 NZ_CP082833:3597296-3597399 [Citrobacter rodentium NBRC 105723 = DSM 16636]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT215348 NZ_CP082833:c3597405-3597261 [Citrobacter rodentium NBRC 105723 = DSM 16636]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
