Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2736229..2736497 | Replicon | chromosome |
| Accession | NZ_CP082831 | ||
| Organism | Escherichia coli strain SCAID WND1-2021 (1/128) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2736267..2736369 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2736229..2736497 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8B75_RS13295 | 2733387..2734826 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K8B75_RS13300 | 2734943..2735179 | + | 237 | WP_001295499.1 | YebV family protein | - |
| K8B75_RS13305 | 2735284..2735475 | + | 192 | WP_001296140.1 | YebW family protein | - |
| K8B75_RS13310 | 2735476..2736132 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 2736229..2736497 | + | 269 | - | - | Antitoxin |
| - | 2736267..2736369 | - | 103 | - | - | Toxin |
| K8B75_RS13315 | 2736527..2736868 | - | 342 | WP_000976472.1 | YebY family protein | - |
| K8B75_RS13320 | 2736881..2737753 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| K8B75_RS13325 | 2737757..2738131 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K8B75_RS13330 | 2738270..2738500 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K8B75_RS13335 | 2738602..2739258 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K8B75_RS13340 | 2739282..2739944 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215311 NZ_CP082831:c2736369-2736267 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT215311 NZ_CP082831:2736229-2736497 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
