Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2176017..2176288 | Replicon | chromosome |
| Accession | NZ_CP082827 | ||
| Organism | Escherichia coli strain SCAID WND2-2021 (3/145) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2176147..2176250 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2176017..2176288 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8B73_RS10195 | 2172572..2173234 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K8B73_RS10200 | 2173258..2173914 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K8B73_RS10205 | 2174016..2174246 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K8B73_RS10210 | 2174385..2174759 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| K8B73_RS10215 | 2174763..2175635 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| K8B73_RS10220 | 2175648..2175989 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2176017..2176288 | - | 272 | - | - | Antitoxin |
| - | 2176147..2176250 | + | 104 | - | - | Toxin |
| K8B73_RS10225 | 2176385..2177041 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| K8B73_RS10230 | 2177042..2177233 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K8B73_RS10235 | 2177338..2177574 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K8B73_RS10240 | 2177692..2179131 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T215273 NZ_CP082827:2176147-2176250 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT215273 NZ_CP082827:c2176288-2176017 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
