Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2279200..2279468 | Replicon | chromosome |
| Accession | NZ_CP082824 | ||
| Organism | Escherichia coli strain SCAID URN1-2021 (19/278) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2279328..2279430 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2279200..2279468 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8B79_RS10940 | 2275753..2276415 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| K8B79_RS10945 | 2276439..2277095 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K8B79_RS10950 | 2277197..2277427 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K8B79_RS10955 | 2277566..2277940 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K8B79_RS10960 | 2277944..2278816 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| K8B79_RS10965 | 2278829..2279170 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2279200..2279468 | - | 269 | - | - | Antitoxin |
| - | 2279328..2279430 | + | 103 | - | - | Toxin |
| K8B79_RS10970 | 2279565..2280221 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| K8B79_RS10975 | 2280222..2280413 | - | 192 | WP_024186842.1 | YebW family protein | - |
| K8B79_RS10980 | 2280518..2280754 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K8B79_RS10985 | 2280873..2282312 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215237 NZ_CP082824:2279328-2279430 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT215237 NZ_CP082824:c2279468-2279200 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
