Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2114680..2114825 | Replicon | chromosome |
| Accession | NZ_CP082805 | ||
| Organism | Klebsiella pneumoniae strain SCAID PHRX1-2021 (13/97) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2114716..2114818 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2114680..2114825 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8B74_RS10175 | 2109810..2111870 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K8B74_RS10180 | 2111874..2112533 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K8B74_RS10185 | 2112612..2112842 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K8B74_RS10190 | 2112955..2113329 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K8B74_RS10195 | 2113333..2114202 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| K8B74_RS10200 | 2114219..2114557 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2114680..2114825 | - | 146 | - | - | Antitoxin |
| - | 2114716..2114818 | + | 103 | - | - | Toxin |
| K8B74_RS10205 | 2115193..2115336 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K8B74_RS10210 | 2115441..2116409 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| K8B74_RS10215 | 2116566..2117219 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K8B74_RS10220 | 2117216..2117407 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K8B74_RS10225 | 2117505..2117744 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K8B74_RS10230 | 2117860..2119293 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215145 NZ_CP082805:2114716-2114818 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT215145 NZ_CP082805:c2114825-2114680 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
