Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2015512..2015657 | Replicon | chromosome |
| Accession | NZ_CP082796 | ||
| Organism | Klebsiella pneumoniae strain SCAID PHRX2-2021 (20/245) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2015548..2015650 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2015512..2015657 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8B77_RS09530 | 2010642..2012702 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K8B77_RS09535 | 2012706..2013365 | - | 660 | WP_032446227.1 | exodeoxyribonuclease X | - |
| K8B77_RS09540 | 2013444..2013674 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K8B77_RS09545 | 2013787..2014161 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K8B77_RS09550 | 2014165..2015034 | + | 870 | WP_032446226.1 | copper homeostasis membrane protein CopD | - |
| K8B77_RS09555 | 2015051..2015389 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2015512..2015657 | - | 146 | - | - | Antitoxin |
| - | 2015548..2015650 | + | 103 | - | - | Toxin |
| K8B77_RS09560 | 2016025..2016168 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K8B77_RS09565 | 2016273..2017241 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K8B77_RS09570 | 2017398..2018051 | + | 654 | WP_032446225.1 | protein-serine/threonine phosphatase | - |
| K8B77_RS09575 | 2018048..2018239 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K8B77_RS09580 | 2018337..2018576 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K8B77_RS09585 | 2018692..2020125 | - | 1434 | WP_032446224.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215101 NZ_CP082796:2015548-2015650 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT215101 NZ_CP082796:c2015657-2015512 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
