Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | TscAT/- |
| Location | 2159426..2159964 | Replicon | chromosome |
| Accession | NZ_CP082789 | ||
| Organism | Staphylococcus aureus strain HL24830 | ||
Toxin (Protein)
| Gene name | TscT | Uniprot ID | A0A0H3K0C1 |
| Locus tag | K3B00_RS10870 | Protein ID | WP_001078344.1 |
| Coordinates | 2159426..2159752 (-) | Length | 109 a.a. |
Antitoxin (Protein)
| Gene name | TscA | Uniprot ID | A0A0H3JSN0 |
| Locus tag | K3B00_RS10875 | Protein ID | WP_001058495.1 |
| Coordinates | 2159755..2159964 (-) | Length | 70 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3B00_RS10845 (2154650) | 2154650..2154991 | - | 342 | WP_001190615.1 | hypothetical protein | - |
| K3B00_RS10850 (2155441) | 2155441..2156082 | - | 642 | WP_001047698.1 | hypothetical protein | - |
| K3B00_RS10855 (2156079) | 2156079..2156459 | - | 381 | WP_000356942.1 | hypothetical protein | - |
| K3B00_RS10860 (2156769) | 2156769..2158478 | - | 1710 | WP_000447473.1 | DUF927 domain-containing protein | - |
| K3B00_RS10865 (2158492) | 2158492..2159361 | - | 870 | WP_209498897.1 | primase alpha helix C-terminal domain-containing protein | - |
| K3B00_RS10870 (2159426) | 2159426..2159752 | - | 327 | WP_001078344.1 | DUF1474 family protein | Toxin |
| K3B00_RS10875 (2159755) | 2159755..2159964 | - | 210 | WP_001058495.1 | hypothetical protein | Antitoxin |
| K3B00_RS10880 (2159957) | 2159957..2160103 | - | 147 | WP_000784885.1 | hypothetical protein | - |
| K3B00_RS10885 (2160100) | 2160100..2160417 | - | 318 | WP_000481967.1 | helix-turn-helix domain-containing protein | - |
| K3B00_RS10890 (2160422) | 2160422..2160640 | - | 219 | WP_209498898.1 | helix-turn-helix transcriptional regulator | - |
| K3B00_RS10895 (2160813) | 2160813..2161487 | + | 675 | WP_000620857.1 | helix-turn-helix transcriptional regulator | - |
| K3B00_RS10900 (2161501) | 2161501..2162673 | + | 1173 | WP_209498900.1 | tyrosine-type recombinase/integrase | - |
| K3B00_RS10905 (2162742) | 2162742..2164358 | - | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| K3B00_RS10910 (2164434) | 2164434..2164718 | - | 285 | WP_000917289.1 | co-chaperone GroES | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | scn / sak / hlb / sell / sec / tsst-1 / groEL | 2096119..2164718 | 68599 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 109 a.a. Molecular weight: 12968.26 Da Isoelectric Point: 4.3050
>T215066 WP_001078344.1 NZ_CP082789:c2159752-2159426 [Staphylococcus aureus]
MNREIKDLFSDLKLLKDSFEDLKDSNGWHFDELYPYEPNHVLNKDELIGEGFSYHERRIHNNQMFDLFHLYIEQFDNIIE
KFYEIEKASSENFGEESDDAKNSIKVAE
MNREIKDLFSDLKLLKDSFEDLKDSNGWHFDELYPYEPNHVLNKDELIGEGFSYHERRIHNNQMFDLFHLYIEQFDNIIE
KFYEIEKASSENFGEESDDAKNSIKVAE
Download Length: 327 bp
>T215066 NZ_CP110395:1952720-1953136 [Paraburkholderia sp. D15]
TTGTATTTGATTGATACCAACGTCATCAGCGAGATCAGGCGTTGGGAGCGGGCGAATGCCGGCGTGCGGCGATTTTTCCG
GCAAGCCGAGCAGGAGGGGCGAAAGCTCTATCTTTCGGTCGTTACAGTCGGCGAACTGAGGCGCGGCGTCGAGCAGGTGC
GCTATCGCGGGGATCTGATGCAGGCGGCCGTACTTGAGCGTTGGATGAACACGGTGCTAAAGCGATTTGCCAAAAGCATT
CTGTCGATCGACGAGATTGCGGCTCACGTCTGGGGCAAGTTGCGGGTGCCGCATTCTGAGCCGGCCGTCGACAAGTTGAT
TGCCGCGACCGCATTGTCGTGCGATCTGGTAGTGGTAACGCGTAACGTGGCGGACTTCGCGGGACCGGGGATACGCGTGG
TCAATCCGTTCGATTGA
TTGTATTTGATTGATACCAACGTCATCAGCGAGATCAGGCGTTGGGAGCGGGCGAATGCCGGCGTGCGGCGATTTTTCCG
GCAAGCCGAGCAGGAGGGGCGAAAGCTCTATCTTTCGGTCGTTACAGTCGGCGAACTGAGGCGCGGCGTCGAGCAGGTGC
GCTATCGCGGGGATCTGATGCAGGCGGCCGTACTTGAGCGTTGGATGAACACGGTGCTAAAGCGATTTGCCAAAAGCATT
CTGTCGATCGACGAGATTGCGGCTCACGTCTGGGGCAAGTTGCGGGTGCCGCATTCTGAGCCGGCCGTCGACAAGTTGAT
TGCCGCGACCGCATTGTCGTGCGATCTGGTAGTGGTAACGCGTAACGTGGCGGACTTCGCGGGACCGGGGATACGCGTGG
TCAATCCGTTCGATTGA
Antitoxin
Download Length: 70 a.a. Molecular weight: 8206.22 Da Isoelectric Point: 4.3718
>AT215066 WP_001058495.1 NZ_CP082789:c2159964-2159755 [Staphylococcus aureus]
MNNEQKEVIEHVVYQLELSVVNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
MNNEQKEVIEHVVYQLELSVVNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
Download Length: 210 bp
>AT215066 NZ_CP110395:1952497-1952733 [Paraburkholderia sp. D15]
ATGGCAAATTTATGGGTTCATAGTGTCGACGACACCTTGTTCGACACGCTTGTTCGGGAAGCCGAAGCGAATGGACGGTC
GGTGGAGGAAGAGCACCGGTTCATTCTCGAGGAAGCATTGCAGACGGTCTACAACCGCCAGTTCATCCGGGCATTGATGA
GCATGCCCAACGTCGGCGAAGACGCCGACTTCGAGCGGGTCAACGACAGACGCGAGGCTCCCGTTGTATTTGATTGA
ATGGCAAATTTATGGGTTCATAGTGTCGACGACACCTTGTTCGACACGCTTGTTCGGGAAGCCGAAGCGAATGGACGGTC
GGTGGAGGAAGAGCACCGGTTCATTCTCGAGGAAGCATTGCAGACGGTCTACAACCGCCAGTTCATCCGGGCATTGATGA
GCATGCCCAACGTCGGCGAAGACGCCGACTTCGAGCGGGTCAACGACAGACGCGAGGCTCCCGTTGTATTTGATTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0H3K0C1 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0H3JSN0 |