Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2903109..2903377 | Replicon | chromosome |
| Accession | NZ_CP082777 | ||
| Organism | Escherichia coli O25:H1 strain CU39ES-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2903147..2903249 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2903109..2903377 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8B91_RS14240 | 2900266..2901705 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K8B91_RS14245 | 2901823..2902059 | + | 237 | WP_001295499.1 | YebV family protein | - |
| K8B91_RS14250 | 2902164..2902355 | + | 192 | WP_001317886.1 | YebW family protein | - |
| K8B91_RS14255 | 2902356..2903012 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2903109..2903377 | + | 269 | - | - | Antitoxin |
| - | 2903147..2903249 | - | 103 | - | - | Toxin |
| K8B91_RS14260 | 2903407..2903748 | - | 342 | WP_000984819.1 | YebY family protein | - |
| K8B91_RS14265 | 2903761..2904633 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| K8B91_RS14270 | 2904637..2905011 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K8B91_RS14275 | 2905150..2905380 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K8B91_RS14280 | 2905483..2906139 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K8B91_RS14285 | 2906163..2906825 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215003 NZ_CP082777:c2903249-2903147 [Escherichia coli O25:H1]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT215003 NZ_CP082777:2903109-2903377 [Escherichia coli O25:H1]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
