Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2625809..2626077 | Replicon | chromosome |
| Accession | NZ_CP082776 | ||
| Organism | Escherichia coli O4:H5 strain CU532-9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2625847..2625949 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2625809..2626077 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8B92_RS12890 | 2622966..2624405 | + | 1440 | WP_001467894.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K8B92_RS12895 | 2624523..2624759 | + | 237 | WP_001295499.1 | YebV family protein | - |
| K8B92_RS12900 | 2624864..2625055 | + | 192 | WP_001296140.1 | YebW family protein | - |
| K8B92_RS12905 | 2625056..2625712 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2625809..2626077 | + | 269 | - | - | Antitoxin |
| - | 2625847..2625949 | - | 103 | - | - | Toxin |
| K8B92_RS12910 | 2626107..2626448 | - | 342 | WP_000977376.1 | YebY family protein | - |
| K8B92_RS12915 | 2626461..2627333 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| K8B92_RS12920 | 2627337..2627711 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K8B92_RS12925 | 2627850..2628080 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K8B92_RS12930 | 2628182..2628838 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K8B92_RS12935 | 2628861..2629523 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214975 NZ_CP082776:c2625949-2625847 [Escherichia coli O4:H5]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT214975 NZ_CP082776:2625809-2626077 [Escherichia coli O4:H5]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
