Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2745608..2745876 | Replicon | chromosome |
| Accession | NZ_CP082774 | ||
| Organism | Escherichia coli O16:H6 strain CU37RT-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2745646..2745748 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2745608..2745876 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8B88_RS13385 | 2742769..2744208 | + | 1440 | WP_024187959.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K8B88_RS13390 | 2744326..2744562 | + | 237 | WP_001295499.1 | YebV family protein | - |
| K8B88_RS13395 | 2744667..2744846 | + | 180 | Protein_2609 | YebW family protein | - |
| K8B88_RS13400 | 2744855..2745511 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2745608..2745876 | + | 269 | - | - | Antitoxin |
| - | 2745646..2745748 | - | 103 | - | - | Toxin |
| K8B88_RS13405 | 2745906..2746247 | - | 342 | WP_000976472.1 | YebY family protein | - |
| K8B88_RS13410 | 2746260..2747132 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| K8B88_RS13415 | 2747136..2747510 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K8B88_RS13420 | 2747649..2747879 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K8B88_RS13425 | 2747981..2748637 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K8B88_RS13430 | 2748661..2749323 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214929 NZ_CP082774:c2745748-2745646 [Escherichia coli O16:H6]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT214929 NZ_CP082774:2745608-2745876 [Escherichia coli O16:H6]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
