Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2811902..2812170 | Replicon | chromosome |
| Accession | NZ_CP082772 | ||
| Organism | Escherichia coli O2:H1 strain HM670 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2811940..2812042 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2811902..2812170 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8B93_RS13690 | 2809059..2810498 | + | 1440 | WP_024186973.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K8B93_RS13695 | 2810616..2810852 | + | 237 | WP_001295499.1 | YebV family protein | - |
| K8B93_RS13700 | 2810957..2811148 | + | 192 | WP_001317886.1 | YebW family protein | - |
| K8B93_RS13705 | 2811149..2811805 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2811902..2812170 | + | 269 | - | - | Antitoxin |
| - | 2811940..2812042 | - | 103 | - | - | Toxin |
| K8B93_RS13710 | 2812200..2812541 | - | 342 | WP_000984819.1 | YebY family protein | - |
| K8B93_RS13715 | 2812554..2813426 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| K8B93_RS13720 | 2813430..2813804 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K8B93_RS13725 | 2813943..2814173 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K8B93_RS13730 | 2814276..2814932 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K8B93_RS13735 | 2814956..2815618 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214866 NZ_CP082772:c2812042-2811940 [Escherichia coli O2:H1]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT214866 NZ_CP082772:2811902-2812170 [Escherichia coli O2:H1]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
