Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2014262..2014407 | Replicon | chromosome |
| Accession | NZ_CP082759 | ||
| Organism | Klebsiella pneumoniae strain 36 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2014298..2014400 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2014262..2014407 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FTO14_RS09855 (FTO14_009855) | 2009392..2011452 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FTO14_RS09860 (FTO14_009860) | 2011456..2012115 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FTO14_RS09865 (FTO14_009865) | 2012194..2012424 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FTO14_RS09870 (FTO14_009870) | 2012537..2012911 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FTO14_RS09875 (FTO14_009875) | 2012915..2013784 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| FTO14_RS09880 (FTO14_009880) | 2013801..2014139 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2014262..2014407 | - | 146 | - | - | Antitoxin |
| - | 2014298..2014400 | + | 103 | - | - | Toxin |
| FTO14_RS09885 (FTO14_009885) | 2014775..2014918 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FTO14_RS09890 (FTO14_009890) | 2015023..2015991 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FTO14_RS09895 (FTO14_009895) | 2016148..2016801 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| FTO14_RS09900 (FTO14_009900) | 2016798..2016989 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FTO14_RS09905 (FTO14_009905) | 2017087..2017326 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FTO14_RS09910 (FTO14_009910) | 2017442..2018875 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214774 NZ_CP082759:2014298-2014400 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT214774 NZ_CP082759:c2014407-2014262 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
