Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2013487..2013632 | Replicon | chromosome |
| Accession | NZ_CP082753 | ||
| Organism | Klebsiella pneumoniae strain 37 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2013523..2013625 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2013487..2013632 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FTO11_RS09850 (FTO11_009850) | 2008617..2010677 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FTO11_RS09855 (FTO11_009855) | 2010681..2011340 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FTO11_RS09860 (FTO11_009860) | 2011419..2011649 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FTO11_RS09865 (FTO11_009865) | 2011762..2012136 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FTO11_RS09870 (FTO11_009870) | 2012140..2013009 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| FTO11_RS09875 (FTO11_009875) | 2013026..2013364 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2013487..2013632 | - | 146 | - | - | Antitoxin |
| - | 2013523..2013625 | + | 103 | - | - | Toxin |
| FTO11_RS09880 (FTO11_009880) | 2014000..2014143 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FTO11_RS09885 (FTO11_009885) | 2014248..2015216 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FTO11_RS09890 (FTO11_009890) | 2015373..2016026 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| FTO11_RS09895 (FTO11_009895) | 2016023..2016214 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FTO11_RS09900 (FTO11_009900) | 2016312..2016551 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FTO11_RS09905 (FTO11_009905) | 2016667..2018100 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214747 NZ_CP082753:2013523-2013625 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT214747 NZ_CP082753:c2013632-2013487 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
