Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2054719..2054987 | Replicon | chromosome |
| Accession | NZ_CP082355 | ||
| Organism | Escherichia coli strain VCSW5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2054846..2054949 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2054719..2054987 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K7X33_RS09755 | 2051272..2051934 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K7X33_RS09760 | 2051958..2052614 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K7X33_RS09765 | 2052716..2052946 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K7X33_RS09770 | 2053085..2053459 | + | 375 | WP_000204696.1 | CopC domain-containing protein YobA | - |
| K7X33_RS09775 | 2053463..2054335 | + | 873 | WP_000879308.1 | copper homeostasis membrane protein CopD | - |
| K7X33_RS09780 | 2054348..2054689 | + | 342 | WP_000976473.1 | DUF2511 domain-containing protein | - |
| - | 2054719..2054987 | - | 269 | - | - | Antitoxin |
| - | 2054846..2054949 | + | 104 | - | - | Toxin |
| K7X33_RS09785 | 2055084..2055740 | + | 657 | WP_000812709.1 | protein-serine/threonine phosphatase | - |
| K7X33_RS09790 | 2055741..2055932 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K7X33_RS09795 | 2056037..2056273 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K7X33_RS09800 | 2056391..2057830 | - | 1440 | WP_001308708.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T214674 NZ_CP082355:2054846-2054949 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT214674 NZ_CP082355:c2054987-2054719 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATGAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATGAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
