Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 1903178..1903449 | Replicon | chromosome |
Accession | NZ_CP082327 | ||
Organism | Escherichia coli strain B2 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 1903308..1903411 (+) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 1903178..1903449 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
K6983_RS09085 | 1899733..1900395 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
K6983_RS09090 | 1900419..1901075 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
K6983_RS09095 | 1901177..1901407 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
K6983_RS09100 | 1901546..1901920 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
K6983_RS09105 | 1901924..1902796 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
K6983_RS09110 | 1902809..1903150 | + | 342 | WP_000976472.1 | YebY family protein | - |
- | 1903178..1903449 | - | 272 | - | - | Antitoxin |
- | 1903308..1903411 | + | 104 | - | - | Toxin |
K6983_RS09115 | 1903546..1904202 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
K6983_RS09120 | 1904203..1904394 | - | 192 | WP_001338167.1 | YebW family protein | - |
K6983_RS09125 | 1904499..1904735 | - | 237 | WP_001338166.1 | YebV family protein | - |
K6983_RS09130 | 1904853..1906292 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T214569 NZ_CP082327:1903308-1903411 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT214569 NZ_CP082327:c1903449-1903178 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT