Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1903178..1903449 Replicon chromosome
Accession NZ_CP082327
Organism Escherichia coli strain B2

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1903308..1903411 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1903178..1903449 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K6983_RS09085 1899733..1900395 - 663 WP_000944258.1 exodeoxyribonuclease X -
K6983_RS09090 1900419..1901075 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein YobB -
K6983_RS09095 1901177..1901407 - 231 WP_000916763.1 DNA polymerase III subunit theta -
K6983_RS09100 1901546..1901920 + 375 WP_000168747.1 CopC domain-containing protein YobA -
K6983_RS09105 1901924..1902796 + 873 WP_000879295.1 copper homeostasis membrane protein CopD -
K6983_RS09110 1902809..1903150 + 342 WP_000976472.1 YebY family protein -
- 1903178..1903449 - 272 - - Antitoxin
- 1903308..1903411 + 104 - - Toxin
K6983_RS09115 1903546..1904202 + 657 WP_000812732.1 protein-serine/threonine phosphatase -
K6983_RS09120 1904203..1904394 - 192 WP_001338167.1 YebW family protein -
K6983_RS09125 1904499..1904735 - 237 WP_001338166.1 YebV family protein -
K6983_RS09130 1904853..1906292 - 1440 WP_001351758.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T214569 NZ_CP082327:1903308-1903411 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT214569 NZ_CP082327:c1903449-1903178 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References