Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 1972974..1973533 | Replicon | chromosome |
| Accession | NZ_CP082319 | ||
| Organism | Vibrio alginolyticus strain XWV9 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A2I3C6F2 |
| Locus tag | K6806_RS09345 | Protein ID | WP_005377065.1 |
| Coordinates | 1973255..1973533 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A2I3C6F3 |
| Locus tag | K6806_RS09340 | Protein ID | WP_005487956.1 |
| Coordinates | 1972974..1973258 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6806_RS09290 (K6806_09220) | 1968097..1968186 | - | 90 | WP_071652537.1 | DUF3265 domain-containing protein | - |
| K6806_RS09295 (K6806_09225) | 1968216..1968515 | - | 300 | WP_005377019.1 | hypothetical protein | - |
| K6806_RS09300 (K6806_09230) | 1968545..1968634 | - | 90 | WP_074531724.1 | DUF3265 domain-containing protein | - |
| K6806_RS09305 (K6806_09235) | 1969166..1969258 | - | 93 | WP_080374080.1 | DUF3265 domain-containing protein | - |
| K6806_RS09310 (K6806_09240) | 1969284..1969646 | - | 363 | WP_005386966.1 | VOC family protein | - |
| K6806_RS09315 | 1969744..1969828 | - | 85 | Protein_1809 | DUF3265 domain-containing protein | - |
| K6806_RS09320 | 1970247..1970356 | - | 110 | Protein_1810 | DUF3265 domain-containing protein | - |
| K6806_RS09325 (K6806_09245) | 1970916..1972037 | - | 1122 | WP_053306504.1 | hypothetical protein | - |
| K6806_RS09330 (K6806_09250) | 1972082..1972174 | - | 93 | WP_077681052.1 | DUF3265 domain-containing protein | - |
| K6806_RS09335 (K6806_09255) | 1972189..1972773 | - | 585 | WP_238951996.1 | hypothetical protein | - |
| K6806_RS09340 (K6806_09260) | 1972974..1973258 | + | 285 | WP_005487956.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| K6806_RS09345 (K6806_09265) | 1973255..1973533 | + | 279 | WP_005377065.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| K6806_RS09350 (K6806_09270) | 1973562..1973639 | - | 78 | WP_238952359.1 | DUF3265 domain-containing protein | - |
| K6806_RS09355 (K6806_09275) | 1973785..1973967 | + | 183 | WP_238951997.1 | hypothetical protein | - |
| K6806_RS09360 (K6806_09280) | 1974048..1974137 | - | 90 | WP_079767000.1 | DUF3265 domain-containing protein | - |
| K6806_RS09365 (K6806_09285) | 1974155..1974433 | - | 279 | WP_115386111.1 | hypothetical protein | - |
| K6806_RS09370 (K6806_09290) | 1974524..1974616 | - | 93 | WP_078513198.1 | DUF3265 domain-containing protein | - |
| K6806_RS09375 (K6806_09295) | 1974631..1975659 | - | 1029 | WP_213909735.1 | DUF4238 domain-containing protein | - |
| K6806_RS09380 (K6806_09300) | 1975805..1976362 | - | 558 | WP_182039726.1 | nucleotidyltransferase family protein | - |
| K6806_RS09385 (K6806_09305) | 1976383..1976472 | - | 90 | WP_171345239.1 | DUF3265 domain-containing protein | - |
| K6806_RS09390 (K6806_09310) | 1976501..1976908 | - | 408 | WP_171345237.1 | hypothetical protein | - |
| K6806_RS09395 (K6806_09315) | 1977043..1977540 | - | 498 | WP_029848292.1 | GNAT family N-acetyltransferase | - |
| K6806_RS09400 (K6806_09320) | 1977567..1977659 | - | 93 | WP_072935543.1 | DUF3265 domain-containing protein | - |
| K6806_RS09405 (K6806_09325) | 1977674..1978174 | - | 501 | WP_238951998.1 | hypothetical protein | - |
| K6806_RS09410 (K6806_09330) | 1978201..1978329 | - | 129 | WP_080996138.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1902984..2016414 | 113430 | |
| - | inside | Integron | - | - | 1911467..2015296 | 103829 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10905.60 Da Isoelectric Point: 4.3430
>T214560 WP_005377065.1 NZ_CP082319:1973255-1973533 [Vibrio alginolyticus]
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPEISMIISYWVEGDIIRVM
RVLHQKQKFPTD
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPEISMIISYWVEGDIIRVM
RVLHQKQKFPTD
Download Length: 279 bp
>T214560 NZ_CP110142:1965608-1965710 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 95 a.a. Molecular weight: 11082.40 Da Isoelectric Point: 9.2167
>AT214560 WP_005487956.1 NZ_CP082319:1972974-1973258 [Vibrio alginolyticus]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQNAKSR
MEERKARIRNRGKQ
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQNAKSR
MEERKARIRNRGKQ
Download Length: 285 bp
>AT214560 NZ_CP110142:c1965717-1965572 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2I3C6F2 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2I3C6F3 |