Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1835678..1835823 | Replicon | chromosome |
| Accession | NZ_CP082290 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain Kp6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1835714..1835816 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1835678..1835823 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6T93_RS08900 (K6T93_08900) | 1830808..1832868 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| K6T93_RS08905 (K6T93_08905) | 1832872..1833531 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K6T93_RS08910 (K6T93_08910) | 1833610..1833840 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6T93_RS08915 (K6T93_08915) | 1833953..1834327 | + | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| K6T93_RS08920 (K6T93_08920) | 1834331..1835200 | + | 870 | WP_222902713.1 | copper homeostasis membrane protein CopD | - |
| K6T93_RS08925 (K6T93_08925) | 1835217..1835555 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1835678..1835823 | - | 146 | - | - | Antitoxin |
| - | 1835714..1835816 | + | 103 | - | - | Toxin |
| K6T93_RS08930 (K6T93_08930) | 1836191..1836334 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6T93_RS08935 (K6T93_08935) | 1836439..1837407 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6T93_RS08940 (K6T93_08940) | 1837564..1838217 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| K6T93_RS08945 (K6T93_08945) | 1838214..1838405 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6T93_RS08950 (K6T93_08950) | 1838503..1838742 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6T93_RS08955 (K6T93_08955) | 1838858..1840291 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214513 NZ_CP082290:1835714-1835816 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT214513 NZ_CP082290:c1835823-1835678 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
