Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2713369..2713520 | Replicon | chromosome |
| Accession | NZ_CP082280 | ||
| Organism | Enterobacter cancerogenus strain HAEC1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2713382..2713484 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2713369..2713520 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HU826_RS12870 (HU826_12870) | 2709634..2711082 | + | 1449 | WP_206562669.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HU826_RS12875 (HU826_12875) | 2711189..2711428 | + | 240 | WP_006176013.1 | YebV family protein | - |
| HU826_RS12880 (HU826_12880) | 2711463..2712107 | - | 645 | WP_058610201.1 | protein-serine/threonine phosphatase | - |
| HU826_RS12885 (HU826_12885) | 2712277..2713218 | + | 942 | WP_058610200.1 | VirK/YbjX family protein | - |
| - | 2713369..2713520 | + | 152 | - | - | Antitoxin |
| - | 2713382..2713484 | - | 103 | - | - | Toxin |
| HU826_RS12890 (HU826_12890) | 2713626..2713964 | - | 339 | WP_058610199.1 | YebY family protein | - |
| HU826_RS12895 (HU826_12895) | 2713979..2714848 | - | 870 | WP_058610198.1 | copper homeostasis membrane protein CopD | - |
| HU826_RS12900 (HU826_12900) | 2714850..2715221 | - | 372 | WP_058610197.1 | CopC domain-containing protein YobA | - |
| HU826_RS12905 (HU826_12905) | 2715359..2715589 | + | 231 | WP_006176029.1 | DNA polymerase III subunit theta | - |
| HU826_RS12910 (HU826_12910) | 2715700..2716350 | + | 651 | WP_058610196.1 | carbon-nitrogen hydrolase family protein | - |
| HU826_RS12915 (HU826_12915) | 2716374..2717036 | + | 663 | WP_088208265.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214497 NZ_CP082280:c2713484-2713382 [Enterobacter cancerogenus]
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT214497 NZ_CP082280:2713369-2713520 [Enterobacter cancerogenus]
CTTTCTTACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCTTACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
