Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2523769..2523915 | Replicon | chromosome |
| Accession | NZ_CP082269 | ||
| Organism | Enterobacter sp. C2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2523776..2523866 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2523769..2523915 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K4042_RS12325 | 2520147..2521586 | + | 1440 | WP_222888133.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K4042_RS12330 | 2521700..2521939 | + | 240 | WP_144818641.1 | YebV family protein | - |
| K4042_RS12335 | 2522070..2522261 | + | 192 | WP_042391328.1 | YebW family protein | - |
| K4042_RS12340 | 2522628..2523635 | + | 1008 | WP_222888135.1 | acyltransferase family protein | - |
| - | 2523769..2523915 | + | 147 | - | - | Antitoxin |
| - | 2523776..2523866 | - | 91 | - | - | Toxin |
| K4042_RS12345 | 2524025..2524363 | - | 339 | WP_222888137.1 | YebY family protein | - |
| K4042_RS12350 | 2524379..2525242 | - | 864 | WP_222888139.1 | copper homeostasis membrane protein CopD | - |
| K4042_RS12355 | 2525244..2525618 | - | 375 | WP_222888141.1 | CopC domain-containing protein YobA | - |
| K4042_RS12360 | 2525753..2525983 | + | 231 | WP_042391334.1 | DNA polymerase III subunit theta | - |
| K4042_RS12365 | 2526008..2526670 | + | 663 | WP_222888147.1 | exodeoxyribonuclease X | - |
| K4042_RS12370 | 2526667..2528724 | - | 2058 | WP_222888149.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 91 bp
>T214469 NZ_CP082269:c2523866-2523776 [Enterobacter sp. C2]
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTTTTTTT
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT214469 NZ_CP082269:2523769-2523915 [Enterobacter sp. C2]
AAAAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAATACGCCTGGCACTTTAAGAATAGATGACAGCGCCAGCTTTTCCAGT
AAAAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAATACGCCTGGCACTTTAAGAATAGATGACAGCGCCAGCTTTTCCAGT
