Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1924780..1925051 | Replicon | chromosome |
| Accession | NC_007779 | ||
| Organism | Escherichia coli str. K-12 substr. W3110 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1924818..1924921 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1924780..1925051 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Y75_RS09675 (Y75_p1811) | 1921937..1923376 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| Y75_RS09680 (Y75_p1812) | 1923494..1923730 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| Y75_RS09685 (Y75_p1813) | 1923835..1924026 | + | 192 | WP_000457842.1 | YebW family protein | - |
| Y75_RS09690 (Y75_p1814) | 1924027..1924683 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1924780..1925051 | + | 272 | - | - | Antitoxin |
| - | 1924818..1924921 | - | 104 | - | - | Toxin |
| Y75_RS09700 (Y75_p1815) | 1925079..1925420 | - | 342 | WP_000976476.1 | YebY family protein | - |
| Y75_RS09705 (Y75_p1816) | 1925433..1926305 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| Y75_RS09710 (Y75_p1817) | 1926309..1926683 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| Y75_RS09715 (Y75_p1818) | 1926822..1927052 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| Y75_RS09720 (Y75_p1819) | 1927154..1927810 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| Y75_RS09725 (Y75_p1820) | 1927834..1928496 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T21439 NC_007779:c1924921-1924818 [Escherichia coli str. K-12 substr. W3110]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT21439 NC_007779:1924780-1925051 [Escherichia coli str. K-12 substr. W3110]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
