Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2079257..2079402 | Replicon | chromosome |
| Accession | NZ_CP082212 | ||
| Organism | Klebsiella pneumoniae strain BJ20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2079293..2079395 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2079257..2079402 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6039_RS10335 (K6039_10310) | 2074387..2076447 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K6039_RS10340 (K6039_10315) | 2076451..2077110 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K6039_RS10345 (K6039_10320) | 2077189..2077419 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6039_RS10350 (K6039_10325) | 2077532..2077906 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6039_RS10355 (K6039_10330) | 2077910..2078779 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| K6039_RS10360 (K6039_10335) | 2078796..2079134 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2079257..2079402 | - | 146 | - | - | Antitoxin |
| - | 2079293..2079395 | + | 103 | - | - | Toxin |
| K6039_RS10365 (K6039_10340) | 2079770..2079913 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6039_RS10370 (K6039_10345) | 2080018..2080986 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6039_RS10375 (K6039_10350) | 2081143..2081796 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K6039_RS10380 (K6039_10355) | 2081793..2081984 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6039_RS10385 (K6039_10360) | 2082082..2082321 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6039_RS10390 (K6039_10365) | 2082437..2083870 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214355 NZ_CP082212:2079293-2079395 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT214355 NZ_CP082212:c2079402-2079257 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
