Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1990368..1990513 | Replicon | chromosome |
| Accession | NZ_CP082211 | ||
| Organism | Klebsiella pneumoniae strain A1718 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1990404..1990506 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1990368..1990513 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6036_RS09530 | 1985498..1987558 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K6036_RS09535 | 1987562..1988221 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| K6036_RS09540 | 1988300..1988530 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6036_RS09545 | 1988643..1989017 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6036_RS09550 | 1989021..1989890 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K6036_RS09555 | 1989907..1990245 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1990368..1990513 | - | 146 | - | - | Antitoxin |
| - | 1990404..1990506 | + | 103 | - | - | Toxin |
| K6036_RS09560 | 1990882..1991025 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6036_RS09565 | 1991130..1992098 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6036_RS09570 | 1992255..1992908 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K6036_RS09575 | 1992905..1993096 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6036_RS09580 | 1993194..1993433 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6036_RS09585 | 1993549..1994982 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214335 NZ_CP082211:1990404-1990506 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT214335 NZ_CP082211:c1990513-1990368 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
