Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2047223..2047368 | Replicon | chromosome |
| Accession | NZ_CP082207 | ||
| Organism | Klebsiella pneumoniae strain KPN43G | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2047259..2047361 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2047223..2047368 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6032_RS09805 | 2042353..2044413 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K6032_RS09810 | 2044417..2045076 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K6032_RS09815 | 2045155..2045385 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6032_RS09820 | 2045498..2045872 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6032_RS09825 | 2045876..2046745 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| K6032_RS09830 | 2046762..2047100 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 2047223..2047368 | - | 146 | - | - | Antitoxin |
| - | 2047259..2047361 | + | 103 | - | - | Toxin |
| K6032_RS09835 | 2047736..2047879 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6032_RS09840 | 2047984..2048952 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6032_RS09845 | 2049109..2049675 | + | 567 | WP_094935968.1 | metallophosphoesterase | - |
| K6032_RS09850 | 2049672..2049863 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6032_RS09855 | 2049961..2050200 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6032_RS09860 | 2050316..2051749 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214313 NZ_CP082207:2047259-2047361 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT214313 NZ_CP082207:c2047368-2047223 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
