Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 3421458..3423178 Replicon chromosome
Accession NZ_CP082178
Organism Xanthomonas fragariae strain SHQP01

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag K4A87_RS16395 Protein ID WP_208587619.1
Coordinates 3421458..3422108 (+) Length 217 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag K4A87_RS16400 Protein ID WP_238135557.1
Coordinates 3422147..3423178 (+) Length 344 a.a.

Genomic Context

K4A87_RS16370K4A87_RS16390K4A87_RS16395K4A87_RS16400K4A87_RS16410K4A87_RS16420K4A87_RS16425K4A87_RS16375K4A87_RS16385K4A87_RS16405K4A87_RS16415K4A87_RS16430
Location: 3416838..3417509 (672 bp)
Type: Others
Protein ID: WP_208587614.1
Location: 3420212..3421138 (927 bp)
Type: Others
Protein ID: WP_208587617.1
Location: 3421458..3422108 (651 bp)
Type: Toxin
Protein ID: WP_208587619.1
Location: 3422147..3423178 (1032 bp)
Type: Antitoxin
Protein ID: WP_238135557.1
Location: 3423930..3424238 (309 bp)
Type: Others
Protein ID: Protein_3046
Location: 3425497..3425737 (241 bp)
Type: Others
Protein ID: Protein_3048
Location: 3425803..3426141 (339 bp)
Type: Others
Protein ID: WP_208587623.1
Location: 3417614..3418960 (1347 bp)
Type: Others
Protein ID: WP_208587615.1
Location: 3419375..3420166 (792 bp)
Type: Others
Protein ID: WP_208587616.1
Location: 3423285..3423845 (561 bp)
Type: Others
Protein ID: WP_208587621.1
Location: 3424416..3425231 (816 bp)
Type: Others
Protein ID: WP_208587622.1
Location: 3426195..3427025 (831 bp)
Type: Others
Protein ID: WP_208587624.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
K4A87_RS16370 (K4A87_16280)3416838..3417509+672WP_208587614.1methyltransferase-
K4A87_RS16375 (K4A87_16285)3417614..3418960-1347WP_208587615.1IS701 family transposase-
K4A87_RS16385 (K4A87_16295)3419375..3420166-792WP_208587616.1polysaccharide deacetylase family protein-
K4A87_RS16390 (K4A87_16300)3420212..3421138+927WP_208587617.1Grx4 family monothiol glutaredoxin-
K4A87_RS16395 (K4A87_16305)3421458..3422108+651WP_208587619.1DUF4433 domain-containing proteinToxin
K4A87_RS16400 (K4A87_16310)3422147..3423178+1032WP_238135557.1macro domain-containing proteinAntitoxin
K4A87_RS16405 (K4A87_16315)3423285..3423845-561WP_208587621.1DUF924 family protein-
K4A87_RS16410 (K4A87_16320)3423930..3424238+309Protein_3046amidohydrolase-
K4A87_RS16415 (K4A87_16325)3424416..3425231-816WP_208587622.1cellulase-
K4A87_RS16420 (K4A87_16330)3425497..3425737+241Protein_3048DegV family protein-
K4A87_RS16425 (K4A87_16335)3425803..3426141+339WP_208587623.1hypothetical protein-
K4A87_RS16430 (K4A87_16340)3426195..3427025-831WP_208587624.1S-formylglutathione hydrolase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(16-216)

Antitoxin

Macro domain

(5-117)


Sequences

Toxin        


Download         Length: 217 a.a.        Molecular weight: 24926.47 Da        Isoelectric Point: 8.4986

>T214269 WP_208587619.1 NZ_CP082178:3421458-3422108 [Xanthomonas fragariae]
MSRRYPNLNPDKALIWRIVHRDNLPWIMDNGLHCGNGGVQSPGWVSIGNPELIAKRANHPVPLAPGGFLNDYVPFYFTPF
SPMLRNIHTGWGGIQRRSNEEIVILVSSLHHVAARGWLFLFTDSHADYQLTTFHSDLANLCKIDWPLLQARDFRRDQEDP
AKFERYQAEALVHRHLPIDGLRGIVGYTDDMKLSIERQLKARNLTLPVHARPEWYF

Download         Length: 651 bp

>T214269 NZ_CP110017:c4635999-4635742 [Escherichia coli]
ATGAATTTATCCCGTCAGGAACAACATACCTTACACGTTCTCGCTAAAGGTAGACGTATTGCGCACGTCCGCGATTCTTC
AGGCCGCGTCACTTCCGTTGAATGCTACAGCCGCGAAGGGCTGTTGCTGACCGACTGCACGCTCGCCGTCTTCAAAAAAC
TCAAAACCAAAAAACTTATCAAGTCCGTCAATGGCCAGCCCTATCGAATCAACACCACCGAGCTGAATAAAGTTCGCGCT
CAGCTCGATAATCGCTAA

Antitoxin


Download         Length: 344 a.a.        Molecular weight: 38126.74 Da        Isoelectric Point: 5.3103

>AT214269 WP_238135557.1 NZ_CP082178:3422147-3423178 [Xanthomonas fragariae]
VEALVNTVNTVGVMGKGIALMFKERFNENFLRYAAACKAKQVRTGKVFVTEANELDGPRWIINFPTKQHWRGDSRIEWIT
EGLQDLRLFLIENKVGSIAIPPLGAGNGGLDWADVRPLIEESLAGLDTDIFVFEPTLKYQNVAKRSGVETLTPARALIAE
LVRRYWVLGVECSLLEIQKLAWFLERNIERAGLPTLDLRFAPNKYGPYADRLRHLLDGLDGSYLHCDKRIGDADPIDVIW
FDDARKSVVHAYLKSEAKQYAPALEATAALIDGFETPFGMELLATVDWLIAQGGVCPQVADMREGIRNWPGGADAAVRKD
RLFDDRALGIALERLTSSASAVT

Download         Length: 1032 bp

>AT214269 NZ_CP110017:c4635730-4635185 [Escherichia coli]
ATGACAGTACACCACTTCACTTTTCATATCACAGATAAAAGTGATGCCAGTGATATCCGGGAAGTCGAAACCCGCGCATT
TGGCTTCAGCAAAGAAGCCGATTTAGTGGCCTCTTTACTTGAGGATGAAAGCGCGCGCCCCGCGTTATCGCTGCTAGCCC
GGTATGAAGGCAAAGCCGTCGGGCATATTTTATTTACCCGGGCAACCTTCAAAGGAGAAATGGATTCACCGTTGATGCAC
ATCCTCGCTCCCCTGGCGGTCATACCGGAATACCAAGGGATGGGCGTGGGAGGACGGTTGATACGCACTGGCATCGAGCA
CCTGAGGTTGATGGGCTGCCAGACGGTTTTTGTTCTCGGCCACGCCACCTATTACCCCCGACATGGGTTCGAACCCTGTG
CCGGAGACAAAGGCTATCCGGCACCTTATCCCATCCCGGAGGAGCACAAAGCCTGCTGGATGATGCAATCACTCACCGCT
CAGCCCATGACCCTGACCGGCCACATCCGGTGCGCAGACCCTGATGAAACCGGAGCACTGACGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References