Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2838429..2838573 | Replicon | chromosome |
| Accession | NZ_CP082147 | ||
| Organism | Enterobacter cloacae complex sp. strain ECL42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2838435..2838538 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2838429..2838573 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6966_RS13520 (K6966_13520) | 2833569..2835011 | + | 1443 | WP_045134186.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K6966_RS13525 (K6966_13525) | 2835118..2835357 | + | 240 | WP_008500472.1 | YebV family protein | - |
| K6966_RS13530 (K6966_13530) | 2835392..2836036 | - | 645 | WP_058690981.1 | protein-serine/threonine phosphatase | - |
| K6966_RS13535 (K6966_13535) | 2836204..2837145 | + | 942 | WP_014884298.1 | VirK/YbjX family protein | - |
| K6966_RS13540 (K6966_13540) | 2837320..2838216 | + | 897 | WP_058690982.1 | benzoate transporter | - |
| - | 2838429..2838573 | + | 145 | - | - | Antitoxin |
| - | 2838435..2838538 | - | 104 | - | - | Toxin |
| K6966_RS13545 (K6966_13545) | 2838677..2839015 | - | 339 | WP_014884299.1 | YebY family protein | - |
| K6966_RS13550 (K6966_13550) | 2839032..2839901 | - | 870 | WP_023330712.1 | copper homeostasis membrane protein CopD | - |
| K6966_RS13555 (K6966_13555) | 2839903..2840274 | - | 372 | WP_058690983.1 | CopC domain-containing protein YobA | - |
| K6966_RS13560 (K6966_13560) | 2840412..2840642 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| K6966_RS13565 (K6966_13565) | 2840753..2841403 | + | 651 | WP_058690984.1 | carbon-nitrogen hydrolase family protein | - |
| K6966_RS13570 (K6966_13570) | 2841428..2842090 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T214215 NZ_CP082147:c2838538-2838435 [Enterobacter cloacae complex sp.]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT214215 NZ_CP082147:2838429-2838573 [Enterobacter cloacae complex sp.]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
