Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2105377..2105648 | Replicon | chromosome |
| Accession | NZ_CP082129 | ||
| Organism | Escherichia coli strain NDM_11.16372 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2105507..2105610 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2105377..2105648 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5P77_RS10095 | 2101932..2102594 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K5P77_RS10100 | 2102618..2103274 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K5P77_RS10105 | 2103376..2103606 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K5P77_RS10110 | 2103745..2104119 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K5P77_RS10115 | 2104123..2104995 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| K5P77_RS10120 | 2105008..2105349 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2105377..2105648 | - | 272 | - | - | Antitoxin |
| - | 2105507..2105610 | + | 104 | - | - | Toxin |
| K5P77_RS10125 | 2105745..2106401 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K5P77_RS10130 | 2106402..2106593 | - | 192 | WP_000457842.1 | YebW family protein | - |
| K5P77_RS10135 | 2106698..2106934 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K5P77_RS10140 | 2107052..2108491 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T214183 NZ_CP082129:2105507-2105610 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT214183 NZ_CP082129:c2105648-2105377 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
