Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2052976..2053247 | Replicon | chromosome |
| Accession | NZ_CP082120 | ||
| Organism | Escherichia coli strain PC-NDM34 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2053106..2053209 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2052976..2053247 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5P75_RS09890 | 2049531..2050193 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K5P75_RS09895 | 2050217..2050873 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K5P75_RS09900 | 2050975..2051205 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K5P75_RS09905 | 2051344..2051718 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| K5P75_RS09910 | 2051722..2052594 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| K5P75_RS09915 | 2052607..2052948 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2052976..2053247 | - | 272 | - | - | Antitoxin |
| - | 2053106..2053209 | + | 104 | - | - | Toxin |
| K5P75_RS09920 | 2053344..2054000 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K5P75_RS09925 | 2054001..2054192 | - | 192 | WP_000457842.1 | YebW family protein | - |
| K5P75_RS09930 | 2054297..2054533 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K5P75_RS09935 | 2054651..2056090 | - | 1440 | WP_024198516.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T214119 NZ_CP082120:2053106-2053209 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT214119 NZ_CP082120:c2053247-2052976 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
