Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2166645..2166790 | Replicon | chromosome |
| Accession | NZ_CP082029 | ||
| Organism | Klebsiella pneumoniae strain KP18-2113 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2166681..2166783 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2166645..2166790 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6164_RS10535 | 2161775..2163835 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K6164_RS10540 | 2163839..2164498 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| K6164_RS10545 | 2164577..2164807 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6164_RS10550 | 2164920..2165294 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6164_RS10555 | 2165298..2166167 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K6164_RS10560 | 2166184..2166522 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2166645..2166790 | - | 146 | - | - | Antitoxin |
| - | 2166681..2166783 | + | 103 | - | - | Toxin |
| K6164_RS10565 | 2167159..2167302 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6164_RS10570 | 2167407..2168375 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6164_RS10575 | 2168532..2169185 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K6164_RS10580 | 2169182..2169373 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6164_RS10585 | 2169471..2169710 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6164_RS10590 | 2169826..2171259 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214011 NZ_CP082029:2166681-2166783 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT214011 NZ_CP082029:c2166790-2166645 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
