Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2147399..2147499 | Replicon | chromosome |
| Accession | NC_007712 | ||
| Organism | Sodalis glossinidius str. morsitans | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2147399..2147479 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2147399..2147499 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SGP1_RS11320 | 2143351..2143704 | - | 354 | WP_041866921.1 | hypothetical protein | - |
| SGP1_RS11325 (SG1274) | 2144253..2144480 | - | 228 | WP_011411103.1 | DNA polymerase III subunit theta | - |
| SGP1_RS11330 (SG1275) | 2144825..2145340 | + | 516 | WP_011411104.1 | non-heme ferritin | - |
| SGP1_RS11335 (SG1276) | 2145573..2145953 | + | 381 | WP_011411105.1 | CopC domain-containing protein YobA | - |
| SGP1_RS11340 (SG1277) | 2145954..2146886 | + | 933 | WP_011411106.1 | copper homeostasis membrane protein CopD | - |
| SGP1_RS11345 (SG1278) | 2146883..2147236 | + | 354 | WP_011411107.1 | YebY family protein | - |
| - | 2147399..2147479 | + | 81 | - | - | Toxin |
| - | 2147399..2147499 | - | 101 | - | - | Antitoxin |
| SGP1_RS29665 | 2147695..2148135 | - | 441 | WP_050747580.1 | hypothetical protein | - |
| SGP1_RS11355 | 2148618..2148917 | - | 300 | Protein_2427 | transposase | - |
| SGP1_RS11360 | 2150243..2150455 | + | 213 | WP_041866922.1 | hypothetical protein | - |
| SGP1_RS11365 (SG1279) | 2150987..2151622 | - | 636 | WP_011411108.1 | two component system response regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2148576..2148917 | 341 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T21397 NC_007712:2147399-2147479 [Sodalis glossinidius str. 'morsitans']
AAGCCTACAAAAATGCCAACTTTTAGCGCACGGCTCTCTCCAAGAGCCATTTCCCTGGACAGAATATAGGAATCGTATTC
G
AAGCCTACAAAAATGCCAACTTTTAGCGCACGGCTCTCTCCAAGAGCCATTTCCCTGGACAGAATATAGGAATCGTATTC
G
Antitoxin
Download Length: 101 bp
>AT21397 NC_007712:c2147499-2147399 [Sodalis glossinidius str. 'morsitans']
TTTCAATCAGATAAAAAAATCGAATACGATTCCTATATTCTGTCCAGGGAAATGGCTCTTGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTTTTGTAGGCTT
TTTCAATCAGATAAAAAAATCGAATACGATTCCTATATTCTGTCCAGGGAAATGGCTCTTGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTTTTGTAGGCTT
