Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 5065212..5065738 Replicon chromosome
Accession NZ_CP082019
Organism Klebsiella pneumoniae strain KP18-2050

Toxin (Protein)


Gene name relE Uniprot ID S1EXL1
Locus tag K6159_RS25095 Protein ID WP_000323025.1
Coordinates 5065451..5065738 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID S1F6D3
Locus tag K6159_RS25090 Protein ID WP_000534858.1
Coordinates 5065212..5065451 (+) Length 80 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K6159_RS25065 5060274..5060978 + 705 WP_001067855.1 IS6-like element IS26 family transposase -
K6159_RS25070 5061210..5062550 + 1341 WP_000589001.1 ISNCY family transposase -
K6159_RS25075 5062971..5063282 + 312 Protein_4923 transposase -
K6159_RS25085 5064626..5064949 + 324 WP_224948387.1 cation transporter dimerization domain-containing protein -
K6159_RS30240 5065083..5065187 - 105 Protein_4926 hypothetical protein -
K6159_RS25090 5065212..5065451 + 240 WP_000534858.1 type II toxin-antitoxin system antitoxin RelB Antitoxin
K6159_RS25095 5065451..5065738 + 288 WP_000323025.1 type II toxin-antitoxin system mRNA interferase RelE Toxin
K6159_RS25100 5065810..5065968 + 159 WP_004181898.1 type I toxin-antitoxin system Hok family toxin -
K6159_RS25105 5066571..5067545 + 975 WP_004181899.1 hypothetical protein -
K6159_RS25110 5067743..5068120 - 378 WP_004181901.1 hypothetical protein -
K6159_RS25115 5068810..5069877 + 1068 WP_004181903.1 hypothetical protein -
K6159_RS25120 5070033..5070380 + 348 WP_004181904.1 hypothetical protein -
K6159_RS25125 5070459..5070692 + 234 WP_004181905.1 hypothetical protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element blaSHV-187 / aph(3')-Ia / tet(A) iucA / iucB / iucC / iucD / iutA / rmpA 5049220..5247472 198252


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 96 a.a.        Molecular weight: 11225.22 Da        Isoelectric Point: 10.1967

>T213958 WP_000323025.1 NZ_CP082019:5065451-5065738 [Klebsiella pneumoniae]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL

Download         Length: 288 bp

>T213958 NZ_CP109924:c4313999-4313649 [Escherichia coli O125ac:K+:H10]
ATGGTAAAGAAAAGTGAATTTGAACGGGGAGACATTGTGCTGGTTGGCTTTGATCCAGCAAGCGGCCATGAACAGCAAGG
TGCTGGTCGACCTGCGCTTGTGCTCTCCGTTCAAGCCTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGG
GCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCGTGGTGCTGGTG
AATCAGGTGCGGATGATGGATCCACGCGCCCGACTGGCAAAGCGTATTGGTCTGGCTGCGGGTGAGGTGGTGGAAGAGGC
GTTATTACGTTTGCAGGCGGTGGTGGAATAA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9071.48 Da        Isoelectric Point: 4.5230

>AT213958 WP_000534858.1 NZ_CP082019:5065212-5065451 [Klebsiella pneumoniae]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL

Download         Length: 240 bp

>AT213958 NZ_CP109924:c4314244-4313993 [Escherichia coli O125ac:K+:H10]
ATGCGTATTACCATAAAAAGATGGGGGAACAGTTCAGGTATGGTCATTCCTAATGTTGTGATGAAAGAACTTAACTTACG
GCCGGGGCAGAGCGTGGAGGCGCAAGTGAGCAACAATCAACTGATTCTGACACCCATCTCCAGGCGCTACTCGCTTGATG
AACTGCTGGCACAGTGTGACATGAACGCCACGGAACTTAGCGAGCAGGATGTCTGGGGTAAATCCACCCCTGCGGGTGAC
GAAATATGGTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 4V7K
PDB 4V7J
PDB 4FXI
PDB 4FXE
PDB 2KC8
PDB 4FXH
PDB 2KC9


Antitoxin

Source ID Structure
PDB 4FXE
PDB 2KC8
PDB 2K29
AlphaFold DB A0A4V1CTS8

References