Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4299968..4300113 | Replicon | chromosome |
| Accession | NZ_CP082014 | ||
| Organism | Klebsiella pneumoniae strain KP18-238 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4300004..4300106 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4299968..4300113 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6162_RS21020 | 4295098..4297158 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K6162_RS21025 | 4297162..4297821 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K6162_RS21030 | 4297900..4298130 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6162_RS21035 | 4298243..4298617 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6162_RS21040 | 4298621..4299490 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| K6162_RS21045 | 4299507..4299845 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4299968..4300113 | - | 146 | - | - | Antitoxin |
| - | 4300004..4300106 | + | 103 | - | - | Toxin |
| K6162_RS21050 | 4300481..4300624 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6162_RS21055 | 4300729..4301697 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6162_RS21060 | 4301854..4302507 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K6162_RS21065 | 4302504..4302695 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6162_RS21070 | 4302793..4303032 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6162_RS21075 | 4303148..4304581 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213924 NZ_CP082014:4300004-4300106 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT213924 NZ_CP082014:c4300113-4299968 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
