Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hipBA/HipA-HipB
Location 2799503..2801091 Replicon chromosome
Accession NZ_CP082010
Organism Klebsiella pneumoniae strain KP18-41

Toxin (Protein)


Gene name hipA Uniprot ID A0A0H3GN97
Locus tag K6147_RS13950 Protein ID WP_004199851.1
Coordinates 2799503..2800825 (-) Length 441 a.a.

Antitoxin (Protein)


Gene name hipB Uniprot ID A0A0H3GXD8
Locus tag K6147_RS13955 Protein ID WP_002904790.1
Coordinates 2800825..2801091 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K6147_RS13935 2794568..2797069 + 2502 WP_004199853.1 fimbria/pilus outer membrane usher protein -
K6147_RS13940 2797057..2798061 + 1005 WP_004199852.1 fimbrial protein -
K6147_RS13945 2798194..2799486 + 1293 WP_002904794.1 glycoside hydrolase family 10 protein -
K6147_RS13950 2799503..2800825 - 1323 WP_004199851.1 type II toxin-antitoxin system HipA family toxin Toxin
K6147_RS13955 2800825..2801091 - 267 WP_002904790.1 type II toxin-antitoxin system antitoxin HipB Antitoxin
K6147_RS13960 2801357..2801683 - 327 WP_002904788.1 hydroxyisourate hydrolase -
K6147_RS13965 2801680..2802180 - 501 WP_002904787.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase -
K6147_RS13970 2802158..2803537 - 1380 WP_004199850.1 nucleobase:cation symporter-2 family protein -
K6147_RS13975 2803883..2805037 + 1155 WP_002904783.1 FAD-dependent urate hydroxylase HpxO -
K6147_RS13980 2805018..2805941 - 924 WP_004199849.1 LysR family hpxDE operon transcriptional regulator HpxR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HipA-like, C-terminal

(149-402)

Antitoxin

Cro/C1-type helix-turn-helix domain

(16-65)


Sequences

Toxin        


Download         Length: 441 a.a.        Molecular weight: 49128.44 Da        Isoelectric Point: 7.2487

>T213898 WP_004199851.1 NZ_CP082010:c2800825-2799503 [Klebsiella pneumoniae]
MATLTTWMNNVRVGTLTRQANGAHSFRYDEEWLRSPRARPLSLSLPLQYGNITADAVYHYFDNLLPDSPQVRDRIVRRYQ
ARSKQPFDLLAEVGRDSVGAVTLLPPGEEAHLEGLRWQTLDEAQLTALLTAYQSDIPLGMITSQDDFRISVAGAQEKTAL
LRMGEQWCIPQGATPTTHIIKLPIGEIKQPNATLDLRESVDNEYLCLALARELGLAVPEAEIITTPRIRALAVTRFDRRW
AQEGRVLLRLPQEDLCQAFGLPSAMKYESDGGPGIAAIMTFLLGSSEALKDRYDFMKFMVFQWLTGATDGHAKNFSIYLL
PGGSYRLTPFYDIISAFPVLGGTGLHLRDLKLSMGLNATKGRKTEINAIYPRHFLATAKAVNFPLEQMLAILQEFAGHVP
QAIESARRTLPADFSSHVWQAITENMLKLHARLQQGLQAL

Download         Length: 1323 bp

>T213898 NZ_CP109911:1026-1313 [Aeromonas salmonicida subsp. salmonicida]
ATGACCTTTGAGCTTGAGTTCGACCCACGAGCGTGGAAGGAATGGAAGAAGTTGGGCGATACAGTTCGCCAGCAGTTCAA
AAAGAAGCTGGCAGAGGTGCTGGAGCGACCTAGGGTAGAGGCGAATCGTCTGCATGGGCTGCCGGACTGCTACAAGATTA
AGCTGCGTGGGGCTGGGTACCGGTTGGTGTATCAGGTACAGGATGATCGGGTGCTGGTCTTCGTGGTCGCAGTGGGTAAA
CGAGAGCGGGAGCAGGTGTATCTGGACGCTGGTTATCGGCTGGAATAG

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9906.27 Da        Isoelectric Point: 8.5912

>AT213898 WP_002904790.1 NZ_CP082010:c2801091-2800825 [Klebsiella pneumoniae]
MNSPQIYSPVQLANYLKLLRQQNHWTQDALARRIGIKQATLSNFENHPDKTTLTTLFKILQSLGVVMTLNAKAAETAPAP
DNNTDLDW

Download         Length: 267 bp

>AT213898 NZ_CP109911:794-1036 [Aeromonas salmonicida subsp. salmonicida]
ATGGGGACGATTAACCTTCGCATCGATGATGAGCTGAAAACCCGCTCGTATGCGGTACTTGAACGACTTGGTGTAACTCC
ATCTGAGTTACTGCGACAAACTCTGGAATATGTGGCCTCTCAGGAACGACTGCCTTTTCGGACGACCGTGGTAACGGAGG
ATGAGGAGGCATTGCTTGTTCTTGTTCGTGAGCGGCTGGCCAGCCCCCAGAAAGGGATCAGGGTGTCGCTGGATGACCTT
TGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GN97

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GXD8

References