Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2144413..2144558 | Replicon | chromosome |
| Accession | NZ_CP082005 | ||
| Organism | Klebsiella pneumoniae strain KP18-8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2144449..2144551 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2144413..2144558 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6148_RS11025 | 2139543..2141603 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K6148_RS11030 | 2141607..2142266 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| K6148_RS11035 | 2142345..2142575 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6148_RS11040 | 2142688..2143062 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6148_RS11045 | 2143066..2143935 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K6148_RS11050 | 2143952..2144290 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2144413..2144558 | - | 146 | - | - | Antitoxin |
| - | 2144449..2144551 | + | 103 | - | - | Toxin |
| K6148_RS11055 | 2144927..2145070 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6148_RS11060 | 2145175..2146143 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6148_RS11065 | 2146300..2146953 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K6148_RS11070 | 2146950..2147141 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6148_RS11075 | 2147239..2147478 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6148_RS11080 | 2147594..2149027 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213869 NZ_CP082005:2144449-2144551 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT213869 NZ_CP082005:c2144558-2144413 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
