Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2071471..2071616 | Replicon | chromosome |
| Accession | NZ_CP082001 | ||
| Organism | Klebsiella pneumoniae strain KP18-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2071507..2071609 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2071471..2071616 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6149_RS10250 | 2066601..2068661 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K6149_RS10255 | 2068665..2069324 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K6149_RS10260 | 2069403..2069633 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6149_RS10265 | 2069746..2070120 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6149_RS10270 | 2070124..2070993 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| K6149_RS10275 | 2071010..2071348 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2071471..2071616 | - | 146 | - | - | Antitoxin |
| - | 2071507..2071609 | + | 103 | - | - | Toxin |
| K6149_RS10280 | 2071984..2072127 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6149_RS10285 | 2072232..2073200 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6149_RS10290 | 2073357..2074010 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K6149_RS10295 | 2074007..2074198 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6149_RS10300 | 2074296..2074535 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6149_RS10305 | 2074651..2076084 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213839 NZ_CP082001:2071507-2071609 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT213839 NZ_CP082001:c2071616-2071471 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
