Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1827362..1827507 | Replicon | chromosome |
| Accession | NZ_CP081897 | ||
| Organism | Klebsiella pneumoniae strain MN-03 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1827398..1827500 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1827362..1827507 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZ659_RS08875 (KZ659_08865) | 1822492..1824552 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| KZ659_RS08880 (KZ659_08870) | 1824556..1825215 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KZ659_RS08885 (KZ659_08875) | 1825294..1825524 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KZ659_RS08890 (KZ659_08880) | 1825637..1826011 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KZ659_RS08895 (KZ659_08885) | 1826015..1826884 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| KZ659_RS08900 (KZ659_08890) | 1826901..1827239 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1827362..1827507 | - | 146 | - | - | Antitoxin |
| - | 1827398..1827500 | + | 103 | - | - | Toxin |
| KZ659_RS08905 (KZ659_08895) | 1827875..1828018 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KZ659_RS08910 (KZ659_08900) | 1828123..1829091 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| KZ659_RS08915 (KZ659_08905) | 1829248..1829901 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| KZ659_RS08920 (KZ659_08910) | 1829898..1830089 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KZ659_RS08925 (KZ659_08915) | 1830187..1830426 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KZ659_RS08930 (KZ659_08920) | 1830542..1831975 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213782 NZ_CP081897:1827398-1827500 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT213782 NZ_CP081897:c1827507-1827362 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
