Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1821277..1821422 | Replicon | chromosome |
| Accession | NZ_CP081896 | ||
| Organism | Klebsiella pneumoniae strain PA-01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1821313..1821415 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1821277..1821422 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZ665_RS08775 (KZ665_08775) | 1816407..1818467 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KZ665_RS08780 (KZ665_08780) | 1818471..1819130 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KZ665_RS08785 (KZ665_08785) | 1819209..1819439 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KZ665_RS08790 (KZ665_08790) | 1819552..1819926 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KZ665_RS08795 (KZ665_08795) | 1819930..1820799 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| KZ665_RS08800 (KZ665_08800) | 1820816..1821154 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1821277..1821422 | - | 146 | - | - | Antitoxin |
| - | 1821313..1821415 | + | 103 | - | - | Toxin |
| KZ665_RS08805 (KZ665_08805) | 1821790..1821933 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KZ665_RS08810 (KZ665_08810) | 1822038..1823006 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KZ665_RS08815 (KZ665_08815) | 1823163..1823816 | + | 654 | WP_023285311.1 | protein-serine/threonine phosphatase | - |
| KZ665_RS08820 (KZ665_08820) | 1823813..1824004 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KZ665_RS08825 (KZ665_08825) | 1824102..1824341 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KZ665_RS08830 (KZ665_08830) | 1824457..1825890 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213763 NZ_CP081896:1821313-1821415 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT213763 NZ_CP081896:c1821422-1821277 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
