Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1836637..1836786 | Replicon | chromosome |
| Accession | NZ_CP081895 | ||
| Organism | Klebsiella quasipneumoniae strain MN-07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1836678..1836780 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1836637..1836786 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZ661_RS08955 | 1831772..1833832 | + | 2061 | WP_044523975.1 | oligopeptidase B | - |
| KZ661_RS08960 | 1833836..1834495 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| KZ661_RS08965 | 1834574..1834804 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KZ661_RS08970 | 1834917..1835291 | + | 375 | WP_064154397.1 | CopC domain-containing protein YobA | - |
| KZ661_RS08975 | 1835295..1836164 | + | 870 | WP_087827148.1 | copper homeostasis membrane protein CopD | - |
| KZ661_RS08980 | 1836181..1836519 | + | 339 | WP_072413393.1 | YebY family protein | - |
| - | 1836637..1836786 | - | 150 | - | - | Antitoxin |
| - | 1836678..1836780 | + | 103 | - | - | Toxin |
| KZ661_RS08985 | 1836913..1837194 | - | 282 | Protein_1752 | tyrosine-type recombinase/integrase | - |
| KZ661_RS08990 | 1837271..1837750 | + | 480 | WP_087827146.1 | lysis protein | - |
| KZ661_RS08995 | 1838205..1838400 | + | 196 | Protein_1754 | DNA polymerase V | - |
| KZ661_RS09000 | 1838539..1840044 | + | 1506 | WP_223064216.1 | hypothetical protein | - |
| KZ661_RS09005 | 1840294..1840569 | - | 276 | WP_142375639.1 | hypothetical protein | - |
| KZ661_RS09010 | 1841165..1841308 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213748 NZ_CP081895:1836678-1836780 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 150 bp
>AT213748 NZ_CP081895:c1836786-1836637 [Klebsiella quasipneumoniae]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
