Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1914711..1914856 | Replicon | chromosome |
| Accession | NZ_CP081894 | ||
| Organism | Klebsiella pneumoniae strain NC-01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1914747..1914849 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1914711..1914856 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZ666_RS09275 | 1909841..1911901 | + | 2061 | WP_032429395.1 | oligopeptidase B | - |
| KZ666_RS09280 | 1911905..1912564 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KZ666_RS09285 | 1912643..1912873 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KZ666_RS09290 | 1912986..1913360 | + | 375 | WP_023286640.1 | CopC domain-containing protein YobA | - |
| KZ666_RS09295 | 1913364..1914233 | + | 870 | WP_023286639.1 | copper homeostasis membrane protein CopD | - |
| KZ666_RS09300 | 1914250..1914588 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1914711..1914856 | - | 146 | - | - | Antitoxin |
| - | 1914747..1914849 | + | 103 | - | - | Toxin |
| KZ666_RS09305 | 1915223..1915366 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KZ666_RS09310 | 1915471..1916439 | - | 969 | WP_074194451.1 | VirK/YbjX family protein | - |
| KZ666_RS09315 | 1916596..1917249 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| KZ666_RS09320 | 1917246..1917437 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KZ666_RS09325 | 1917535..1917774 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KZ666_RS09330 | 1917890..1919323 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213731 NZ_CP081894:1914747-1914849 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT213731 NZ_CP081894:c1914856-1914711 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
